About us

At GenomeMiner, we believe that bioinformatics in combination with DNA sequencing and synthetic DNA will allow us to sustainably produce valuable natural products and even develop new ones. Originally founded as Tupac.Bio, the company started developing software tools for synthetic biology companies. Finding the market demand quite limited, the team started a proof of concept experiment with a local partner to screen for wild microbes with anti-fungal characteristics for downstream analysis.  This early-stage work motivated a pivot into genome mining, and focus on obtaining data from organisms in the subtropical region of Okinawa. While the original tenets of the company remain the same, to provide bioinformatics solutions that are intuitive, essential, and collaborative, our vision has expanded to obtain proprietary data to build better genome mining software that is A.I. driven, and be able to develop our own end-products.

Get in touch today and let us know how we can help.

Leadership

Troublesome

Eli Lyons

CEO

Eli moved to Tokyo for PhD studies in the Department of Computational Biology and Medical Science at the University of Tokyo. His research included analyzing data from high-throughput mutagenic screens, wet-lab work in retinal development, and transcriptome analysis. While enrolled in his PhD he joined a Japanese startup and designed detailed protocols for applying Next-Generation Sequencing to phage display screens and performed business development.

While a PhD student he coauthored a paper with Paul on DNA barcoding. He left his PhD studies to apply himself to Tupac.Bio full-time.

Eli has an MSc in Computer Engineering and is fluent in Mandarin Chinese.

He's our stats superman.

Paul Sheridan, phd

CSO

Paul has numerous peer-reviewed academic publications in the area of applied statistics, including multi-omics data analysis. Before joining Tupac.Bio full-time he was an Assistant Professor at Hirosaki University, and he was formerly a Postdoctoral Researcher at the University of Tokyo. He has over a decade of experience programming in R and designing and implementing statistical analysis pipelines.

His extensive experience has given him the ability to translate biology researcher goals into statistical problems.

Paul is conversational in French and Japanese. You can learn more about him here.

He’s been coding since run and them have been singin’ here they go

JUSTIN KOVALCHUK

CTO

Justin has a BS in Physics with a minor in CS and originally moved to Japan in 2009 to work as an engineer in the semi-conductor laser industry. He has lead many projects to market both professionally and personally and has over a decade of experience in software and systems development.

He has worked on programs for optical design/simulation, multivariable optimization, and web backend/frontend using C++, Java, and C# languages. He has developed systems for data pipelines, web crawlers, and web backend/frontend using Python, Ruby, and JS/Node.js. Also he has launched apps for iOS using Objective-C and Swift.

Justin is fluent in Japanese.

Team

CHARLANE CARDOS, M.S.

Research Associate

JUSTIN MAK

Front End Developer

Ryo Kita

Bioinformatics Developer

NICK MULIADI, M.B.A.

Finance Associate

KHALID ALAM, PHD

Research Consultant

DAYNE BARTON

Media Design

Advisors

HIROKI SUGA, PHD

Dr. Suga is the co-founder of Peptidream (2013 IPO) and professor at University of Tokyo. He is a voluntary advisor.

ROBERT KNELLER, JD, MD, MPH

Dr. Kneller has advanced degrees in multiple areas. He is a professor at University of Tokyo and is involved in vaccine development as well as analysis of the Japanese startup landscape.

YUKI SHIRATO, ESQ

Yuki is an angel investor and corporate lawyer working in mergers and acquisitions.